Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190167
                    [wgsExptID] => 15
                    [Batch] => Edinburgh_5
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 5
                    [DateSubmitted] => 
                    [FastqID] => 179
                    [wgsID] => 244
                    [fwdFile] => FS_32967_R1.fastq.gz
                    [fwdMd5] => 2a2b9ec1ebac318fc20707f6da6764a3
                    [revFile] => FS_32967_R2.fastq.gz
                    [revMd5] => 39670812341ffe5e666871b5ec515e8e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679344
                    [enaRun] => ERR11271774
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 386
                    [wgsID] => 244
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-23 09:34:00
                    [dateCompleted] => 2023-03-24 05:17:00
                    [bamMd5] => 2615c99823882f6a12745704beb926cf
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 871848089
                    [primaryReads] => 
                    [mappedReads] => 868837823
                    [primaryMapped] => 
                    [pairedReads] => 849309620
                    [meanInsertSize] => 435.05
                    [meanReadDepth] => 40.10
                    [variantsCalled] => 5736565
                    [variantsFiltered] => 5383868
                    [snpCount] => 3752359
                    [snpHom] => 2329911
                    [snpHet] => 1422448
                    [indelCount] => 1638647
                    [insHom] => 393967
                    [delHom] => 530338
                    [insHet] => 334046
                    [delHet] => 404069
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517657
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517657/FS_32967-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242