Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190095
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 183
[wgsID] => 293
[fwdFile] => GD_19106_R1.fastq.gz
[fwdMd5] => 64f405a9a8fda922b3d7ee271361b3af
[revFile] => GD_19106_R2.fastq.gz
[revMd5] => 3d069b197e22dfb4a6a3a17359212bec
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664690
[enaRun] => ERR11256481
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 226
[wgsID] => 293
[refGenome] => cf4
[dateSubmitted] => 2022-10-20 12:44:00
[dateCompleted] => 2022-10-21 18:49:00
[bamMd5] => 8d3a8d61fd4550485b3b3f95356d20f6
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 933028490
[primaryReads] =>
[mappedReads] => 929432759
[primaryMapped] =>
[pairedReads] => 910397240
[meanInsertSize] => 517.38
[meanReadDepth] => 49.13
[variantsCalled] => 6245571
[variantsFiltered] => 5853408
[snpCount] => 4088193
[snpHom] => 1992742
[snpHet] => 2095451
[indelCount] => 1775370
[insHom] => 326061
[delHom] => 450260
[insHet] => 468568
[delHet] => 566136
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21778100
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778100/GD_19106-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242