Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190095
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 183
                    [wgsID] => 293
                    [fwdFile] => GD_19106_R1.fastq.gz
                    [fwdMd5] => 64f405a9a8fda922b3d7ee271361b3af
                    [revFile] => GD_19106_R2.fastq.gz
                    [revMd5] => 3d069b197e22dfb4a6a3a17359212bec
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664690
                    [enaRun] => ERR11256481
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 226
                    [wgsID] => 293
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-20 12:44:00
                    [dateCompleted] => 2022-10-21 18:49:00
                    [bamMd5] => 8d3a8d61fd4550485b3b3f95356d20f6
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 933028490
                    [primaryReads] => 
                    [mappedReads] => 929432759
                    [primaryMapped] => 
                    [pairedReads] => 910397240
                    [meanInsertSize] => 517.38
                    [meanReadDepth] => 49.13
                    [variantsCalled] => 6245571
                    [variantsFiltered] => 5853408
                    [snpCount] => 4088193
                    [snpHom] => 1992742
                    [snpHet] => 2095451
                    [indelCount] => 1775370
                    [insHom] => 326061
                    [delHom] => 450260
                    [insHet] => 468568
                    [delHet] => 566136
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778100
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778100/GD_19106-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242