Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190173
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 184
[wgsID] => 250
[fwdFile] => GIT_33179_R1.fastq.gz
[fwdMd5] => d54ee12f46b21a2742d38b76b165fb2a
[revFile] => GIT_33179_R2.fastq.gz
[revMd5] => 6821ff77fd2e310e3a32a583e9e4b7c2
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10677691
[enaRun] => ERR11270103
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 225
[wgsID] => 250
[refGenome] => cf4
[dateSubmitted] => 2022-10-20 12:43:00
[dateCompleted] => 2022-10-21 11:04:00
[bamMd5] => 7d0be3326bfd61e1d52db6eaa81ba1ed
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 927905866
[primaryReads] =>
[mappedReads] => 838448665
[primaryMapped] =>
[pairedReads] => 820022964
[meanInsertSize] => 447.90
[meanReadDepth] => 39.73
[variantsCalled] => 6194934
[variantsFiltered] => 5850134
[snpCount] => 4098694
[snpHom] => 1957720
[snpHet] => 2140974
[indelCount] => 1761050
[insHom] => 321797
[delHom] => 442335
[insHet] => 464652
[delHet] => 567029
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21782177
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782177/GIT_33179-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242