Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190219
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 185
[wgsID] => 153
[fwdFile] => GoS_30513_R1.fastq.gz
[fwdMd5] => ac37aadddac91e246c966cee2f1a7a56
[revFile] => GoS_30513_R2.fastq.gz
[revMd5] => 0aa90489e771f1b2750c3c37a45eea34
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692172
[enaRun] => ERR11284563
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 326
[wgsID] => 153
[refGenome] => cf4
[dateSubmitted] => 2023-02-24 12:21:00
[dateCompleted] => 2023-02-25 06:43:00
[bamMd5] => 21ef97894f4f75d231b1b7eb724eca04
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 831049215
[primaryReads] =>
[mappedReads] => 829394701
[primaryMapped] =>
[pairedReads] => 812415460
[meanInsertSize] => 426.78
[meanReadDepth] => 37.74
[variantsCalled] => 6274194
[variantsFiltered] => 5933785
[snpCount] => 4137168
[snpHom] =>
[snpHet] =>
[indelCount] => 1807303
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21782999
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782999/GoS_30513-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242