Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296821
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 642
                    [wgsID] => 19
                    [fwdFile] => GR_37195_R1.fastq.gz
                    [fwdMd5] => 99c13e20dd415e295952c62c04a4e176
                    [revFile] => GR_37195_R2.fastq.gz
                    [revMd5] => ccb3df1ed1fad51d82203480a4e61ef9
                    [rawReads] => 737394336
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830387
                    [enaRun] => ERR11423079
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 42
                    [wgsID] => 19
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-19 10:59:00
                    [dateCompleted] => 2023-07-20 05:55:00
                    [bamMd5] => b14b1074ad0c768c637b1ce32f859895
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 682934644
                    [primaryReads] => 
                    [mappedReads] => 682172352
                    [primaryMapped] => 
                    [pairedReads] => 664202938
                    [meanInsertSize] => 352.71
                    [meanReadDepth] => 34.04
                    [variantsCalled] => 5595267
                    [variantsFiltered] => 5255700
                    [snpCount] => 3657359
                    [snpHom] => 2380410
                    [snpHet] => 1276949
                    [indelCount] => 1604530
                    [insHom] => 405355
                    [delHom] => 556512
                    [insHet] => 298736
                    [delHet] => 364309
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659491
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659491/GR_37195-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242