Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190189
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 193
[wgsID] => 275
[fwdFile] => GSD_33831_R1.fastq.gz
[fwdMd5] => 9a1c74417e3bb80e7a780e395262b71c
[revFile] => GSD_33831_R2.fastq.gz
[revMd5] => 4388dd3be46e4f816506dae660c6eb12
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665925
[enaRun] => ERR11257716
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 413
[wgsID] => 275
[refGenome] => cf4
[dateSubmitted] => 2023-04-05 15:17:00
[dateCompleted] => 2023-04-06 08:31:00
[bamMd5] => b09083b8ee32946425d664dbb076ec22
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 955671305
[primaryReads] =>
[mappedReads] => 953710542
[primaryMapped] =>
[pairedReads] => 939600024
[meanInsertSize] => 499.19
[meanReadDepth] => 47.35
[variantsCalled] => 4464102
[variantsFiltered] => 4147702
[snpCount] => 2779287
[snpHom] => 971508
[snpHet] => 1807779
[indelCount] => 1375524
[insHom] => 172195
[delHom] => 275717
[insHet] => 409515
[delHet] => 553407
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21780963
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780963/GSD_33831-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242