Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269021
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 681
[wgsID] => 425
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1467549380
[FastqRCS] => 0
[enaExperiment] => SRX7136383
[enaRun] => SRR10441638
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1527
[wgsID] => 425
[refGenome] => cf4
[dateSubmitted] => 2024-02-14 12:22:54
[dateCompleted] => 2024-02-15 13:03:25
[bamMd5] => 4788c2c48f8969721ff9a2b8c666cd3b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 785501973
[primaryReads] => 727209548
[mappedReads] => 783251155
[primaryMapped] => 724958730
[pairedReads] => 662625656
[meanInsertSize] => 361.43
[meanReadDepth] => 27.02
[variantsCalled] => 5117943
[variantsFiltered] => 4773183
[snpCount] => 3118229
[snpHom] =>
[snpHet] =>
[indelCount] => 1662176
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
