Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269026
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 684
[wgsID] => 426
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1409337800
[FastqRCS] => 0
[enaExperiment] => SRX7136398
[enaRun] => SRR10441639
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1534
[wgsID] => 426
[refGenome] => cf4
[dateSubmitted] => 2024-02-16 11:43:03
[dateCompleted] => 2024-02-20 15:02:28
[bamMd5] => ee1228715e4f48b1de7f01af2668f6f5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 752067585
[primaryReads] => 698604007
[mappedReads] => 748742336
[primaryMapped] => 695278758
[pairedReads] => 637736886
[meanInsertSize] => 338.98
[meanReadDepth] => 31.82
[variantsCalled] => 5040761
[variantsFiltered] => 4705227
[snpCount] => 3128587
[snpHom] =>
[snpHet] =>
[indelCount] => 1583804
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
