Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296805
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 636
                    [wgsID] => 13
                    [fwdFile] => GSZM_36294_R1.fastq.gz
                    [fwdMd5] => e2208dde802e6f6e1348e39de35cc147
                    [revFile] => GSZM_36294_R2.fastq.gz
                    [revMd5] => 00560b710c30046383988222d1d11e03
                    [rawReads] => 1122252678
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830381
                    [enaRun] => ERR11423073
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 27
                    [wgsID] => 13
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-12 10:01:00
                    [dateCompleted] => 2023-07-13 09:33:00
                    [bamMd5] => 25e500de075810f21e788ccfba9a9b14
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 860201918
                    [primaryReads] => 
                    [mappedReads] => 858851857
                    [primaryMapped] => 
                    [pairedReads] => 836488236
                    [meanInsertSize] => 341.04
                    [meanReadDepth] => 41.01
                    [variantsCalled] => 6638974
                    [variantsFiltered] => 6268383
                    [snpCount] => 4395563
                    [snpHom] => 1694842
                    [snpHet] => 2700721
                    [indelCount] => 1884670
                    [insHom] => 271343
                    [delHom] => 386627
                    [insHet] => 574678
                    [delHet] => 698198
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659492
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659492/GSZM_36294-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242