Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA5560215
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 188
[wgsID] => 148
[fwdFile] => GS_29455_R1.fastq.gz
[fwdMd5] => e9b8e3ad2ef2791b2abc1f827b242d6d
[revFile] => GS_29455_R2.fastq.gz
[revMd5] => 30cc7a183097889005f3b13e4876d9fc
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3311515
[enaRun] => ERR3284981
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 321
[wgsID] => 148
[refGenome] => cf4
[dateSubmitted] => 2023-03-14 08:54:00
[dateCompleted] => 2023-03-15 03:46:00
[bamMd5] => 525ba0a1558cff622e7b69d5ffd8774f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 907824503
[primaryReads] =>
[mappedReads] => 906207811
[primaryMapped] =>
[pairedReads] => 888350260
[meanInsertSize] => 413.17
[meanReadDepth] => 41.70
[variantsCalled] => 6467612
[variantsFiltered] => 6075151
[snpCount] => 4239002
[snpHom] =>
[snpHet] =>
[indelCount] => 1847407
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21783000
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783000/GS_29455-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242