Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA5560218
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 191
[wgsID] => 156
[fwdFile] => GS_32059_R1.fastq.gz
[fwdMd5] => 394b5561c1a3f194b51d23ab8dd734b3
[revFile] => GS_32059_R2.fastq.gz
[revMd5] => a225f711cf9e3300114652ccc8a74fda
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3311516
[enaRun] => ERR3284982
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 329
[wgsID] => 156
[refGenome] => cf4
[dateSubmitted] => 2023-03-07 12:48:00
[dateCompleted] => 2023-03-08 08:13:00
[bamMd5] => fee0d846c4af0410334bbe512b244b02
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 779839487
[primaryReads] =>
[mappedReads] => 778270399
[primaryMapped] =>
[pairedReads] => 763381106
[meanInsertSize] => 425.71
[meanReadDepth] => 36.34
[variantsCalled] => 6429664
[variantsFiltered] => 6098507
[snpCount] => 4261236
[snpHom] =>
[snpHet] =>
[indelCount] => 1848482
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21783003
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783003/GS_32059-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242