Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099813
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 824
                    [wgsID] => 507
                    [fwdFile] => GS_32570_R1.fastq.gz
                    [fwdMd5] => 566701713e93be4edd6ee03b057288b2
                    [revFile] => GS_32570_R2.fastq.gz
                    [revMd5] => 71a2ac70cdefc5f493f9461dea0eac6a
                    [rawReads] => 1025727154
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611274
                    [enaRun] => ERR14209054
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1717
                    [wgsID] => 507
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-26 10:31:22
                    [dateCompleted] => 2024-12-27 05:58:21
                    [bamMd5] => a2675f70eaf0ed3b11a7b5826ebcd670
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 771270583
                    [primaryReads] => 763886515
                    [mappedReads] => 770246453
                    [primaryMapped] => 762862385
                    [pairedReads] => 750568042
                    [meanInsertSize] => 365.85
                    [meanReadDepth] => 31.22
                    [variantsCalled] => 6332859
                    [variantsFiltered] => 6031724
                    [snpCount] => 4265045
                    [snpHom] => 1830177
                    [snpHet] => 2434868
                    [indelCount] => 1776322
                    [insHom] => 330708
                    [delHom] => 449606
                    [insHet] => 465418
                    [delHet] => 568502
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759347
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759347/GS_32570-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242