Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099813
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 824
[wgsID] => 507
[fwdFile] => GS_32570_R1.fastq.gz
[fwdMd5] => 566701713e93be4edd6ee03b057288b2
[revFile] => GS_32570_R2.fastq.gz
[revMd5] => 71a2ac70cdefc5f493f9461dea0eac6a
[rawReads] => 1025727154
[FastqRCS] => 1
[enaExperiment] => ERX13611274
[enaRun] => ERR14209054
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1717
[wgsID] => 507
[refGenome] => cf4
[dateSubmitted] => 2024-12-26 10:31:22
[dateCompleted] => 2024-12-27 05:58:21
[bamMd5] => a2675f70eaf0ed3b11a7b5826ebcd670
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 771270583
[primaryReads] => 763886515
[mappedReads] => 770246453
[primaryMapped] => 762862385
[pairedReads] => 750568042
[meanInsertSize] => 365.85
[meanReadDepth] => 31.22
[variantsCalled] => 6332859
[variantsFiltered] => 6031724
[snpCount] => 4265045
[snpHom] => 1830177
[snpHet] => 2434868
[indelCount] => 1776322
[insHom] => 330708
[delHom] => 449606
[insHet] => 465418
[delHet] => 568502
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759347
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759347/GS_32570-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242