Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190188
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 192
                    [wgsID] => 268
                    [fwdFile] => GS_32603_R1.fastq.gz
                    [fwdMd5] => fc685ff1ecba15bca3d7ef47a1d39002
                    [revFile] => GS_32603_R2.fastq.gz
                    [revMd5] => 847ac7b158ad66fc5ad04ae6ff246d3b
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665919
                    [enaRun] => ERR11257710
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 406
                    [wgsID] => 268
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-04-05 15:14:00
                    [dateCompleted] => 2023-04-06 08:55:00
                    [bamMd5] => 169c8762532d32f6cc0ccc7760a739d9
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 930594198
                    [primaryReads] => 
                    [mappedReads] => 927370748
                    [primaryMapped] => 
                    [pairedReads] => 908774124
                    [meanInsertSize] => 488.89
                    [meanReadDepth] => 47.54
                    [variantsCalled] => 6492946
                    [variantsFiltered] => 6113785
                    [snpCount] => 4276068
                    [snpHom] => 1802814
                    [snpHet] => 2473254
                    [indelCount] => 1849173
                    [insHom] => 285899
                    [delHom] => 399870
                    [insHet] => 549083
                    [delHet] => 658050
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780962
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780962/GS_32603-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242