Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099817
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 828
                    [wgsID] => 511
                    [fwdFile] => GS_33217_R1.fastq.gz
                    [fwdMd5] => 75f54e64b7e44ddc404a59cfa5a2ef3c
                    [revFile] => GS_33217_R2.fastq.gz
                    [revMd5] => d3339c235005d6a0921b491d9ed639e2
                    [rawReads] => 1116975134
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611275
                    [enaRun] => ERR14209055
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1718
                    [wgsID] => 511
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-26 10:31:47
                    [dateCompleted] => 2024-12-27 06:26:39
                    [bamMd5] => 02445fe58b3551bf001f13db76123f7a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 935320818
                    [primaryReads] => 926533624
                    [mappedReads] => 934322382
                    [primaryMapped] => 925535188
                    [pairedReads] => 911866648
                    [meanInsertSize] => 376.21
                    [meanReadDepth] => 36.74
                    [variantsCalled] => 6286494
                    [variantsFiltered] => 5982778
                    [snpCount] => 4221112
                    [snpHom] => 1847141
                    [snpHet] => 2373971
                    [indelCount] => 1771205
                    [insHom] => 333708
                    [delHom] => 452652
                    [insHet] => 461150
                    [delHet] => 561354
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759348
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759348/GS_33217-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242