Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099837
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 848
[wgsID] => 531
[fwdFile] => GS_41451_R1.fastq.gz
[fwdMd5] => 4777852074c847d9193e764c126b0a3e
[revFile] => GS_41451_R2.fastq.gz
[revMd5] => f163939d9822c808cb57519d1b23455d
[rawReads] => 1004115514
[FastqRCS] => 1
[enaExperiment] => ERX13611278
[enaRun] => ERR14209058
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1701
[wgsID] => 531
[refGenome] => cf4
[dateSubmitted] => 2024-12-23 11:50:28
[dateCompleted] => 2024-12-24 06:46:47
[bamMd5] => 4c5a85646b3b5cc5ed5a0b4ab6cbe047
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 675038664
[primaryReads] => 666025826
[mappedReads] => 674060186
[primaryMapped] => 665047348
[pairedReads] => 653567106
[meanInsertSize] => 343.76
[meanReadDepth] => 26.99
[variantsCalled] => 6212340
[variantsFiltered] => 5946979
[snpCount] => 4217194
[snpHom] => 1855721
[snpHet] => 2361473
[indelCount] => 1738475
[insHom] => 336081
[delHom] => 456550
[insHet] => 439284
[delHet] => 540510
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759345
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759345/GS_41451-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242