Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099838
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 849
                    [wgsID] => 532
                    [fwdFile] => GS_41452_R1.fastq.gz
                    [fwdMd5] => dc4ae909444d7224f53477ff1bf27ab6
                    [revFile] => GS_41452_R2.fastq.gz
                    [revMd5] => a96d9d077cedea3ac37a921f543eac28
                    [rawReads] => 986330996
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611279
                    [enaRun] => ERR14209059
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1721
                    [wgsID] => 532
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-26 10:33:00
                    [dateCompleted] => 2024-12-27 05:46:01
                    [bamMd5] => 0a92d3577f97a4a2ac46af9caea57e4b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 784263816
                    [primaryReads] => 776145220
                    [mappedReads] => 783328294
                    [primaryMapped] => 775209698
                    [pairedReads] => 762728330
                    [meanInsertSize] => 372.34
                    [meanReadDepth] => 31.65
                    [variantsCalled] => 6187888
                    [variantsFiltered] => 5912134
                    [snpCount] => 4177437
                    [snpHom] => 1878865
                    [snpHet] => 2298572
                    [indelCount] => 1743525
                    [insHom] => 339942
                    [delHom] => 462983
                    [insHet] => 441737
                    [delHet] => 533859
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759350
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759350/GS_41452-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242