Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099840
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 851
                    [wgsID] => 534
                    [fwdFile] => GS_41454_R1.fastq.gz
                    [fwdMd5] => 87c2654c481e5d9272540b0628a5fd61
                    [revFile] => GS_41454_R2.fastq.gz
                    [revMd5] => 364a619e0d307c7d866f386b017f96ba
                    [rawReads] => 1102873380
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611281
                    [enaRun] => ERR14209061
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1723
                    [wgsID] => 534
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-27 09:37:42
                    [dateCompleted] => 2024-12-28 06:31:33
                    [bamMd5] => 50e980a591f471e18a6990d01605af66
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 733093840
                    [primaryReads] => 723198262
                    [mappedReads] => 731600902
                    [primaryMapped] => 721705324
                    [pairedReads] => 709503754
                    [meanInsertSize] => 333.90
                    [meanReadDepth] => 28.97
                    [variantsCalled] => 6264947
                    [variantsFiltered] => 5989831
                    [snpCount] => 4238030
                    [snpHom] => 1853369
                    [snpHet] => 2384661
                    [indelCount] => 1761130
                    [insHom] => 334016
                    [delHom] => 457124
                    [insHet] => 454417
                    [delHet] => 551223
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759354
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759354/GS_41454-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242