Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099840
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 851
[wgsID] => 534
[fwdFile] => GS_41454_R1.fastq.gz
[fwdMd5] => 87c2654c481e5d9272540b0628a5fd61
[revFile] => GS_41454_R2.fastq.gz
[revMd5] => 364a619e0d307c7d866f386b017f96ba
[rawReads] => 1102873380
[FastqRCS] => 1
[enaExperiment] => ERX13611281
[enaRun] => ERR14209061
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1723
[wgsID] => 534
[refGenome] => cf4
[dateSubmitted] => 2024-12-27 09:37:42
[dateCompleted] => 2024-12-28 06:31:33
[bamMd5] => 50e980a591f471e18a6990d01605af66
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 733093840
[primaryReads] => 723198262
[mappedReads] => 731600902
[primaryMapped] => 721705324
[pairedReads] => 709503754
[meanInsertSize] => 333.90
[meanReadDepth] => 28.97
[variantsCalled] => 6264947
[variantsFiltered] => 5989831
[snpCount] => 4238030
[snpHom] => 1853369
[snpHet] => 2384661
[indelCount] => 1761130
[insHom] => 334016
[delHom] => 457124
[insHet] => 454417
[delHet] => 551223
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759354
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759354/GS_41454-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242