Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099841
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 852
[wgsID] => 535
[fwdFile] => GS_41464_R1.fastq.gz
[fwdMd5] => d9211de69be3399ebd043987771003ae
[revFile] => GS_41464_R2.fastq.gz
[revMd5] => 98e01c7b641cd3438ddbb844f13de4ff
[rawReads] => 1068947544
[FastqRCS] => 1
[enaExperiment] => ERX13611282
[enaRun] => ERR14209062
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1724
[wgsID] => 535
[refGenome] => cf4
[dateSubmitted] => 2024-12-27 09:38:33
[dateCompleted] => 2024-12-28 00:45:48
[bamMd5] => c80023cad69e84049a2d4d9f3243a904
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 628042505
[primaryReads] => 620503474
[mappedReads] => 626817470
[primaryMapped] => 619278439
[pairedReads] => 608125214
[meanInsertSize] => 357.32
[meanReadDepth] => 24.74
[variantsCalled] => 6145334
[variantsFiltered] => 5877330
[snpCount] => 4170629
[snpHom] => 1798722
[snpHet] => 2371907
[indelCount] => 1715079
[insHom] => 324514
[delHom] => 447077
[insHet] => 440521
[delHet] => 535503
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759351
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759351/GS_41464-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242