Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099857
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 868
                    [wgsID] => 551
                    [fwdFile] => GS_41513_R1.fastq.gz
                    [fwdMd5] => a11c6a314df1de10d8dc61777d056534
                    [revFile] => GS_41513_R2.fastq.gz
                    [revMd5] => 4c6afd9cc6d6796f26ea8880f5d8a5b5
                    [rawReads] => 1182034130
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611283
                    [enaRun] => ERR14209063
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1725
                    [wgsID] => 551
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-27 09:39:45
                    [dateCompleted] => 2024-12-28 06:18:38
                    [bamMd5] => b6701371a5f3fc49fb89a8b41e38735a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 840262976
                    [primaryReads] => 831151780
                    [mappedReads] => 839120714
                    [primaryMapped] => 830009518
                    [pairedReads] => 816390514
                    [meanInsertSize] => 367.34
                    [meanReadDepth] => 32.82
                    [variantsCalled] => 6310259
                    [variantsFiltered] => 6023899
                    [snpCount] => 4252221
                    [snpHom] => 1775834
                    [snpHet] => 2476387
                    [indelCount] => 1781417
                    [insHom] => 322194
                    [delHom] => 439687
                    [insHet] => 475486
                    [delHet] => 582531
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759353
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759353/GS_41513-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242