Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099857
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 868
[wgsID] => 551
[fwdFile] => GS_41513_R1.fastq.gz
[fwdMd5] => a11c6a314df1de10d8dc61777d056534
[revFile] => GS_41513_R2.fastq.gz
[revMd5] => 4c6afd9cc6d6796f26ea8880f5d8a5b5
[rawReads] => 1182034130
[FastqRCS] => 1
[enaExperiment] => ERX13611283
[enaRun] => ERR14209063
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1725
[wgsID] => 551
[refGenome] => cf4
[dateSubmitted] => 2024-12-27 09:39:45
[dateCompleted] => 2024-12-28 06:18:38
[bamMd5] => b6701371a5f3fc49fb89a8b41e38735a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 840262976
[primaryReads] => 831151780
[mappedReads] => 839120714
[primaryMapped] => 830009518
[pairedReads] => 816390514
[meanInsertSize] => 367.34
[meanReadDepth] => 32.82
[variantsCalled] => 6310259
[variantsFiltered] => 6023899
[snpCount] => 4252221
[snpHom] => 1775834
[snpHet] => 2476387
[indelCount] => 1781417
[insHom] => 322194
[delHom] => 439687
[insHet] => 475486
[delHet] => 582531
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ25759353
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759353/GS_41513-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242