Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189982
                    [wgsExptID] => 20
                    [Batch] => Edinburgh_10
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 7
                    [DateSubmitted] => 2018-10-23
                    [FastqID] => 194
                    [wgsID] => 46
                    [fwdFile] => GWP_35039_R1.fastq.gz
                    [fwdMd5] => 1bfb50e1354502510a980e01ab9ca764
                    [revFile] => GWP_35039_R2.fastq.gz
                    [revMd5] => 09ab3cae2389e12f75f3b828a999ba19
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10644421
                    [enaRun] => ERR11217530
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 77
                    [wgsID] => 46
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-07 14:11:00
                    [dateCompleted] => 2022-10-08 06:43:00
                    [bamMd5] => 019377df25e575426800a5f8a5bd5926
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 894612863
                    [primaryReads] => 
                    [mappedReads] => 671403358
                    [primaryMapped] => 
                    [pairedReads] => 657770792
                    [meanInsertSize] => 468.33
                    [meanReadDepth] => 35.25
                    [variantsCalled] => 6466572
                    [variantsFiltered] => 6112345
                    [snpCount] => 4270990
                    [snpHom] => 1796064
                    [snpHet] => 2474926
                    [indelCount] => 1852666
                    [insHom] => 280708
                    [delHom] => 397528
                    [insHet] => 543907
                    [delHet] => 671790
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736958
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736958/GWP_35039-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242