Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189982
[wgsExptID] => 20
[Batch] => Edinburgh_10
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 7
[DateSubmitted] => 2018-10-23
[FastqID] => 194
[wgsID] => 46
[fwdFile] => GWP_35039_R1.fastq.gz
[fwdMd5] => 1bfb50e1354502510a980e01ab9ca764
[revFile] => GWP_35039_R2.fastq.gz
[revMd5] => 09ab3cae2389e12f75f3b828a999ba19
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10644421
[enaRun] => ERR11217530
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 77
[wgsID] => 46
[refGenome] => cf4
[dateSubmitted] => 2022-10-07 14:11:00
[dateCompleted] => 2022-10-08 06:43:00
[bamMd5] => 019377df25e575426800a5f8a5bd5926
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 894612863
[primaryReads] =>
[mappedReads] => 671403358
[primaryMapped] =>
[pairedReads] => 657770792
[meanInsertSize] => 468.33
[meanReadDepth] => 35.25
[variantsCalled] => 6466572
[variantsFiltered] => 6112345
[snpCount] => 4270990
[snpHom] => 1796064
[snpHet] => 2474926
[indelCount] => 1852666
[insHom] => 280708
[delHom] => 397528
[insHet] => 543907
[delHet] => 671790
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21736958
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736958/GWP_35039-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242