Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189983
                    [wgsExptID] => 20
                    [Batch] => Edinburgh_10
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 7
                    [DateSubmitted] => 2018-10-23
                    [FastqID] => 198
                    [wgsID] => 42
                    [fwdFile] => ISP_27785_R1.fastq.gz
                    [fwdMd5] => b6b4c8e4c4ab2052cae46cc969021e8b
                    [revFile] => ISP_27785_R2.fastq.gz
                    [revMd5] => 6aaf14845aa19e161396b3919d0c2dc6
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10644417
                    [enaRun] => ERR11217526
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 78
                    [wgsID] => 42
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-04-06 14:38:00
                    [dateCompleted] => 2022-04-07 10:05:00
                    [bamMd5] => 83e132f07a244b8973142af52895f844
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 907637198
                    [primaryReads] => 
                    [mappedReads] => 809049209
                    [primaryMapped] => 
                    [pairedReads] => 777365986
                    [meanInsertSize] => 460.43
                    [meanReadDepth] => 40.81
                    [variantsCalled] => 6640494
                    [variantsFiltered] => 6262359
                    [snpCount] => 4374223
                    [snpHom] => 1703658
                    [snpHet] => 2670565
                    [indelCount] => 1900209
                    [insHom] => 263919
                    [delHom] => 373598
                    [insHet] => 586634
                    [delHet] => 722007
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736959
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736959/ISP_27785-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242