Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189984
                    [wgsExptID] => 20
                    [Batch] => Edinburgh_10
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 7
                    [DateSubmitted] => 2018-10-23
                    [FastqID] => 200
                    [wgsID] => 43
                    [fwdFile] => ISP_28899_R1.fastq.gz
                    [fwdMd5] => c56520b95c1caa21371336f5443cba6a
                    [revFile] => ISP_28899_R2.fastq.gz
                    [revMd5] => 4c1878a18a87b42aa913d0b483243442
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10644418
                    [enaRun] => ERR11217527
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 79
                    [wgsID] => 43
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-04-06 14:38:00
                    [dateCompleted] => 2022-04-07 09:54:00
                    [bamMd5] => 7e844b203bb1c4ecfafd02f99989eb15
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 946092230
                    [primaryReads] => 
                    [mappedReads] => 932978954
                    [primaryMapped] => 
                    [pairedReads] => 909025392
                    [meanInsertSize] => 509.80
                    [meanReadDepth] => 49.48
                    [variantsCalled] => 6803907
                    [variantsFiltered] => 6411463
                    [snpCount] => 4486484
                    [snpHom] => 1674917
                    [snpHet] => 2811567
                    [indelCount] => 1938087
                    [insHom] => 255477
                    [delHom] => 363733
                    [insHet] => 613841
                    [delHet] => 753062
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736960
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736960/ISP_28899-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242