Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190190
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 196
                    [wgsID] => 263
                    [fwdFile] => IS_18850_R1.fastq.gz
                    [fwdMd5] => 10d7d73d5bc9252e58004c7fc518b2fd
                    [revFile] => IS_18850_R2.fastq.gz
                    [revMd5] => 427b713490a666bd9bb8516a28383b4e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665914
                    [enaRun] => ERR11257705
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 401
                    [wgsID] => 263
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-30 09:39:00
                    [dateCompleted] => 2023-03-31 03:34:00
                    [bamMd5] => 27e30cc5d3389f287b34ef94fd7e5c2c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 851660943
                    [primaryReads] => 
                    [mappedReads] => 848162712
                    [primaryMapped] => 
                    [pairedReads] => 830160184
                    [meanInsertSize] => 454.90
                    [meanReadDepth] => 42.34
                    [variantsCalled] => 6171189
                    [variantsFiltered] => 5801733
                    [snpCount] => 4048403
                    [snpHom] => 2078920
                    [snpHet] => 1969483
                    [indelCount] => 1763070
                    [insHom] => 339017
                    [delHom] => 466064
                    [insHet] => 449075
                    [delHet] => 542974
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780964
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780964/IS_18850-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242