Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099833
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 844
[wgsID] => 527
[fwdFile] => IS_41380_R1.fastq.gz
[fwdMd5] => 660c37635026c021ebd72c7d40efd1b5
[revFile] => IS_41380_R2.fastq.gz
[revMd5] => 5e0de8f1bbb90a1132e38b56488f23d7
[rawReads] => 1024701888
[FastqRCS] => 1
[enaExperiment] => ERX13611285
[enaRun] => ERR14209065
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1727
[wgsID] => 527
[refGenome] => cf4
[dateSubmitted] => 2024-12-27 09:40:35
[dateCompleted] => 2024-12-28 04:37:15
[bamMd5] => aa748d96163741e718f232acf5ff88d1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 834677105
[primaryReads] => 828201969
[mappedReads] => 833786742
[primaryMapped] => 827311606
[pairedReads] => 815115840
[meanInsertSize] => 396.89
[meanReadDepth] => 33.20
[variantsCalled] => 5979918
[variantsFiltered] => 5683231
[snpCount] => 4007473
[snpHom] => 2044425
[snpHet] => 1963048
[indelCount] => 1683845
[insHom] => 378069
[delHom] => 504578
[insHet] => 372836
[delHet] => 457873
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25796749
[enaBam] =>