Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099833
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 844
                    [wgsID] => 527
                    [fwdFile] => IS_41380_R1.fastq.gz
                    [fwdMd5] => 660c37635026c021ebd72c7d40efd1b5
                    [revFile] => IS_41380_R2.fastq.gz
                    [revMd5] => 5e0de8f1bbb90a1132e38b56488f23d7
                    [rawReads] => 1024701888
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611285
                    [enaRun] => ERR14209065
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1727
                    [wgsID] => 527
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-27 09:40:35
                    [dateCompleted] => 2024-12-28 04:37:15
                    [bamMd5] => aa748d96163741e718f232acf5ff88d1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 834677105
                    [primaryReads] => 828201969
                    [mappedReads] => 833786742
                    [primaryMapped] => 827311606
                    [pairedReads] => 815115840
                    [meanInsertSize] => 396.89
                    [meanReadDepth] => 33.20
                    [variantsCalled] => 5979918
                    [variantsFiltered] => 5683231
                    [snpCount] => 4007473
                    [snpHom] => 2044425
                    [snpHet] => 1963048
                    [indelCount] => 1683845
                    [insHom] => 378069
                    [delHom] => 504578
                    [insHet] => 372836
                    [delHet] => 457873
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25796749
                    [enaBam] => 
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242