Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099835
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 846
[wgsID] => 529
[fwdFile] => IS_41398_R1.fastq.gz
[fwdMd5] => 082e040f587337cbe550e3cffd844a36
[revFile] => IS_41398_R2.fastq.gz
[revMd5] => 00ccb8af1094d0468fc53d99e2bef09b
[rawReads] => 1239717816
[FastqRCS] => 1
[enaExperiment] => ERX13611286
[enaRun] => ERR14209066
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1728
[wgsID] => 529
[refGenome] => cf4
[dateSubmitted] => 2024-12-27 09:40:54
[dateCompleted] => 2024-12-28 05:19:55
[bamMd5] => 693011d51b1183f219592964f853773a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 732867976
[primaryReads] => 723383560
[mappedReads] => 731627053
[primaryMapped] => 722142637
[pairedReads] => 709035134
[meanInsertSize] => 354.14
[meanReadDepth] => 29.14
[variantsCalled] => 5972971
[variantsFiltered] => 5706680
[snpCount] => 4027833
[snpHom] => 2012656
[snpHet] => 2015177
[indelCount] => 1686773
[insHom] => 371230
[delHom] => 498877
[insHet] => 380857
[delHet] => 465326
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25796750
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25796750/IS_41398-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242