Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099851
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 862
                    [wgsID] => 545
                    [fwdFile] => IS_41492_R1.fastq.gz
                    [fwdMd5] => 4e968a70364ad582c3b1d239afe0d657
                    [revFile] => IS_41492_R2.fastq.gz
                    [revMd5] => ebed40475b5e78c3510d84e715732a3f
                    [rawReads] => 870756778
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611288
                    [enaRun] => ERR14209068
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1702
                    [wgsID] => 545
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-23 11:50:57
                    [dateCompleted] => 2024-12-24 06:21:20
                    [bamMd5] => dc804e7daecfd1b3c4957ccf90ed72e8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 703702297
                    [primaryReads] => 697907276
                    [mappedReads] => 702837837
                    [primaryMapped] => 697042816
                    [pairedReads] => 684256062
                    [meanInsertSize] => 413.47
                    [meanReadDepth] => 28.34
                    [variantsCalled] => 5933785
                    [variantsFiltered] => 5660121
                    [snpCount] => 4005604
                    [snpHom] => 2022655
                    [snpHet] => 1982949
                    [indelCount] => 1662229
                    [insHom] => 373339
                    [delHom] => 501949
                    [insHet] => 367757
                    [delHet] => 446604
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25796752
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25796752/IS_41492-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242