Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099856
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 867
[wgsID] => 550
[fwdFile] => IS_41498_R1.fastq.gz
[fwdMd5] => fd5ae441d7b5d0912e563f43f30cbd05
[revFile] => IS_41498_R2.fastq.gz
[revMd5] => c729b78df23651cbaed095b301720bd7
[rawReads] => 864646868
[FastqRCS] => 1
[enaExperiment] => ERX13611289
[enaRun] => ERR14209069
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1730
[wgsID] => 550
[refGenome] => cf4
[dateSubmitted] => 2025-01-02 11:47:03
[dateCompleted] => 2025-01-04 14:44:17
[bamMd5] => 118b939f93e2216c4c1249bce8647d0a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 689126190
[primaryReads] => 681438414
[mappedReads] => 688237966
[primaryMapped] => 680550190
[pairedReads] => 669049162
[meanInsertSize] => 353.20
[meanReadDepth] => 27.98
[variantsCalled] => 6042249
[variantsFiltered] => 5781591
[snpCount] => 4090204
[snpHom] => 1983004
[snpHet] => 2107200
[indelCount] => 1699475
[insHom] => 361408
[delHom] => 489994
[insHet] => 397453
[delHet] => 481466
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25842050
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842050/IS_41498-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242