Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099856
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 867
                    [wgsID] => 550
                    [fwdFile] => IS_41498_R1.fastq.gz
                    [fwdMd5] => fd5ae441d7b5d0912e563f43f30cbd05
                    [revFile] => IS_41498_R2.fastq.gz
                    [revMd5] => c729b78df23651cbaed095b301720bd7
                    [rawReads] => 864646868
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611289
                    [enaRun] => ERR14209069
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1730
                    [wgsID] => 550
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-02 11:47:03
                    [dateCompleted] => 2025-01-04 14:44:17
                    [bamMd5] => 118b939f93e2216c4c1249bce8647d0a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 689126190
                    [primaryReads] => 681438414
                    [mappedReads] => 688237966
                    [primaryMapped] => 680550190
                    [pairedReads] => 669049162
                    [meanInsertSize] => 353.20
                    [meanReadDepth] => 27.98
                    [variantsCalled] => 6042249
                    [variantsFiltered] => 5781591
                    [snpCount] => 4090204
                    [snpHom] => 1983004
                    [snpHet] => 2107200
                    [indelCount] => 1699475
                    [insHom] => 361408
                    [delHom] => 489994
                    [insHet] => 397453
                    [delHet] => 481466
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25842050
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842050/IS_41498-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242