Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099862
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 873
                    [wgsID] => 556
                    [fwdFile] => IS_41707_R1.fastq.gz
                    [fwdMd5] => 24710347bde2c960db7a7f63a699aa1d
                    [revFile] => IS_41707_R2.fastq.gz
                    [revMd5] => 33b7332a73f2cbffcfd9f47a8f76a3c1
                    [rawReads] => 967458670
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611290
                    [enaRun] => ERR14209070
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1731
                    [wgsID] => 556
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-02 11:47:28
                    [dateCompleted] => 2025-01-04 14:44:17
                    [bamMd5] => b67cedf2c9e3545b1de43743f49dd53b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 793144342
                    [primaryReads] => 786444252
                    [mappedReads] => 792126781
                    [primaryMapped] => 785426691
                    [pairedReads] => 772153352
                    [meanInsertSize] => 393.62
                    [meanReadDepth] => 29.42
                    [variantsCalled] => 6052656
                    [variantsFiltered] => 5754061
                    [snpCount] => 4071798
                    [snpHom] => 2000836
                    [snpHet] => 2070962
                    [indelCount] => 1690157
                    [insHom] => 368643
                    [delHom] => 494576
                    [insHet] => 384509
                    [delHet] => 472610
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25842051
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842051/IS_41707-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242