Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099862
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 873
[wgsID] => 556
[fwdFile] => IS_41707_R1.fastq.gz
[fwdMd5] => 24710347bde2c960db7a7f63a699aa1d
[revFile] => IS_41707_R2.fastq.gz
[revMd5] => 33b7332a73f2cbffcfd9f47a8f76a3c1
[rawReads] => 967458670
[FastqRCS] => 1
[enaExperiment] => ERX13611290
[enaRun] => ERR14209070
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1731
[wgsID] => 556
[refGenome] => cf4
[dateSubmitted] => 2025-01-02 11:47:28
[dateCompleted] => 2025-01-04 14:44:17
[bamMd5] => b67cedf2c9e3545b1de43743f49dd53b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 793144342
[primaryReads] => 786444252
[mappedReads] => 792126781
[primaryMapped] => 785426691
[pairedReads] => 772153352
[meanInsertSize] => 393.62
[meanReadDepth] => 29.42
[variantsCalled] => 6052656
[variantsFiltered] => 5754061
[snpCount] => 4071798
[snpHom] => 2000836
[snpHet] => 2070962
[indelCount] => 1690157
[insHom] => 368643
[delHom] => 494576
[insHet] => 384509
[delHet] => 472610
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25842051
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842051/IS_41707-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242