Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099864
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 875
[wgsID] => 558
[fwdFile] => IS_41709_R1.fastq.gz
[fwdMd5] => c76172d26dcc038e28bda6c45555cfb5
[revFile] => IS_41709_R2.fastq.gz
[revMd5] => 852a451a176b891b638dae5c5b3a2ad2
[rawReads] => 989312488
[FastqRCS] => 1
[enaExperiment] => ERX13611292
[enaRun] => ERR14209072
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1733
[wgsID] => 558
[refGenome] => cf4
[dateSubmitted] => 2025-01-02 11:48:17
[dateCompleted] => 2025-01-04 14:44:17
[bamMd5] => 720ed4694f0b6d23ec02980b101777f7
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 812324897
[primaryReads] => 805606247
[mappedReads] => 811424941
[primaryMapped] => 804706291
[pairedReads] => 790912232
[meanInsertSize] => 398.80
[meanReadDepth] => 33.05
[variantsCalled] => 6061217
[variantsFiltered] => 5748091
[snpCount] => 4057365
[snpHom] => 2023352
[snpHet] => 2034013
[indelCount] => 1698848
[insHom] => 369231
[delHom] => 496512
[insHet] => 389832
[delHet] => 474198
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25842053
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842053/IS_41709-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242