Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099865
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 876
                    [wgsID] => 559
                    [fwdFile] => IS_41710_R1.fastq.gz
                    [fwdMd5] => d67990167490a8f625e1e45a07742fc1
                    [revFile] => IS_41710_R2.fastq.gz
                    [revMd5] => a183d777fc69070dd3a3f81840b43878
                    [rawReads] => 1038363578
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611293
                    [enaRun] => ERR14209073
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1734
                    [wgsID] => 559
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-02 11:48:59
                    [dateCompleted] => 2025-01-04 14:44:16
                    [bamMd5] => 0c7f4005b7abe27e06aa11b77289fc7c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 808398355
                    [primaryReads] => 801696197
                    [mappedReads] => 807541247
                    [primaryMapped] => 800839089
                    [pairedReads] => 787662534
                    [meanInsertSize] => 377.95
                    [meanReadDepth] => 32.46
                    [variantsCalled] => 5997425
                    [variantsFiltered] => 5714969
                    [snpCount] => 4030021
                    [snpHom] => 2045986
                    [snpHet] => 1984035
                    [indelCount] => 1692926
                    [insHom] => 376255
                    [delHom] => 507077
                    [insHet] => 379197
                    [delHet] => 460435
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25842054
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842054/IS_41710-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242