Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099865
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 876
[wgsID] => 559
[fwdFile] => IS_41710_R1.fastq.gz
[fwdMd5] => d67990167490a8f625e1e45a07742fc1
[revFile] => IS_41710_R2.fastq.gz
[revMd5] => a183d777fc69070dd3a3f81840b43878
[rawReads] => 1038363578
[FastqRCS] => 1
[enaExperiment] => ERX13611293
[enaRun] => ERR14209073
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1734
[wgsID] => 559
[refGenome] => cf4
[dateSubmitted] => 2025-01-02 11:48:59
[dateCompleted] => 2025-01-04 14:44:16
[bamMd5] => 0c7f4005b7abe27e06aa11b77289fc7c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 808398355
[primaryReads] => 801696197
[mappedReads] => 807541247
[primaryMapped] => 800839089
[pairedReads] => 787662534
[meanInsertSize] => 377.95
[meanReadDepth] => 32.46
[variantsCalled] => 5997425
[variantsFiltered] => 5714969
[snpCount] => 4030021
[snpHom] => 2045986
[snpHet] => 1984035
[indelCount] => 1692926
[insHom] => 376255
[delHom] => 507077
[insHet] => 379197
[delHet] => 460435
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25842054
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842054/IS_41710-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242