Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189976
[wgsExptID] => 9
[Batch] => Oxford_6
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:15X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 472
[wgsID] => 118
[fwdFile] => IT_29138_R1.fastq.gz
[fwdMd5] => 3e18c6892aebb6107348167e46d58454
[revFile] => IT_29138_R2.fastq.gz
[revMd5] => fc070f05cd6f11d58adccd81b782c858
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10810950
[enaRun] => ERR11403159
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 232
[wgsID] => 118
[refGenome] => cf4
[dateSubmitted] => 2022-11-20 11:13:00
[dateCompleted] => 2022-11-21 08:16:00
[bamMd5] => fc1030e331f57c580043d09a148490a9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 667635052
[primaryReads] =>
[mappedReads] => 664515226
[primaryMapped] =>
[pairedReads] => 639459034
[meanInsertSize] => 363.14
[meanReadDepth] => 34.80
[variantsCalled] => 5744438
[variantsFiltered] => 5473821
[snpCount] => 3909897
[snpHom] =>
[snpHet] =>
[indelCount] => 1570683
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21789630
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789630/IT_29138-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242