Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190191
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 207
                    [wgsID] => 269
                    [fwdFile] => IWS_32604_R1.fastq.gz
                    [fwdMd5] => b1098b1cd7019a1ee905a8b62ef209de
                    [revFile] => IWS_32604_R2.fastq.gz
                    [revMd5] => f7cd79f53c73d5c73495fe9cedfc542a
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665920
                    [enaRun] => ERR11257711
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 407
                    [wgsID] => 269
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-30 09:40:00
                    [dateCompleted] => 2023-03-31 02:44:00
                    [bamMd5] => 5046e3503ef79469aafefc691df5973f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 755257861
                    [primaryReads] => 
                    [mappedReads] => 752222115
                    [primaryMapped] => 
                    [pairedReads] => 736428824
                    [meanInsertSize] => 466.87
                    [meanReadDepth] => 39.21
                    [variantsCalled] => 6289720
                    [variantsFiltered] => 5957973
                    [snpCount] => 4162579
                    [snpHom] => 1911116
                    [snpHet] => 2251463
                    [indelCount] => 1805835
                    [insHom] => 309382
                    [delHom] => 428675
                    [insHet] => 499729
                    [delHet] => 607145
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780965
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780965/IWS_32604-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242