Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190191
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 207
[wgsID] => 269
[fwdFile] => IWS_32604_R1.fastq.gz
[fwdMd5] => b1098b1cd7019a1ee905a8b62ef209de
[revFile] => IWS_32604_R2.fastq.gz
[revMd5] => f7cd79f53c73d5c73495fe9cedfc542a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665920
[enaRun] => ERR11257711
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 407
[wgsID] => 269
[refGenome] => cf4
[dateSubmitted] => 2023-03-30 09:40:00
[dateCompleted] => 2023-03-31 02:44:00
[bamMd5] => 5046e3503ef79469aafefc691df5973f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 755257861
[primaryReads] =>
[mappedReads] => 752222115
[primaryMapped] =>
[pairedReads] => 736428824
[meanInsertSize] => 466.87
[meanReadDepth] => 39.21
[variantsCalled] => 6289720
[variantsFiltered] => 5957973
[snpCount] => 4162579
[snpHom] => 1911116
[snpHet] => 2251463
[indelCount] => 1805835
[insHom] => 309382
[delHom] => 428675
[insHet] => 499729
[delHet] => 607145
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21780965
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780965/IWS_32604-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242