Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190241
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 202
                    [wgsID] => 211
                    [fwdFile] => IW_32557_R1.fastq.gz
                    [fwdMd5] => 2c85233f0c092050bcba14954c19a8ce
                    [revFile] => IW_32557_R2.fastq.gz
                    [revMd5] => 55ae4c9fcb528f02442965e9f9ecbd9a
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679357
                    [enaRun] => ERR11271787
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 356
                    [wgsID] => 211
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-20 17:29:00
                    [dateCompleted] => 2023-03-21 11:43:00
                    [bamMd5] => 3216e50a7144f1fe0c878ced1f5558ee
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 747264318
                    [primaryReads] => 
                    [mappedReads] => 745139209
                    [primaryMapped] => 
                    [pairedReads] => 730291982
                    [meanInsertSize] => 502.38
                    [meanReadDepth] => 34.39
                    [variantsCalled] => 6132252
                    [variantsFiltered] => 5786384
                    [snpCount] => 4029324
                    [snpHom] => 2093572
                    [snpHet] => 1935752
                    [indelCount] => 1766271
                    [insHom] => 333292
                    [delHom] => 463144
                    [insHet] => 445653
                    [delHet] => 555268
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375577
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375577/IW_32557-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242