Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190241
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 202
[wgsID] => 211
[fwdFile] => IW_32557_R1.fastq.gz
[fwdMd5] => 2c85233f0c092050bcba14954c19a8ce
[revFile] => IW_32557_R2.fastq.gz
[revMd5] => 55ae4c9fcb528f02442965e9f9ecbd9a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679357
[enaRun] => ERR11271787
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 356
[wgsID] => 211
[refGenome] => cf4
[dateSubmitted] => 2023-03-20 17:29:00
[dateCompleted] => 2023-03-21 11:43:00
[bamMd5] => 3216e50a7144f1fe0c878ced1f5558ee
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 747264318
[primaryReads] =>
[mappedReads] => 745139209
[primaryMapped] =>
[pairedReads] => 730291982
[meanInsertSize] => 502.38
[meanReadDepth] => 34.39
[variantsCalled] => 6132252
[variantsFiltered] => 5786384
[snpCount] => 4029324
[snpHom] => 2093572
[snpHet] => 1935752
[indelCount] => 1766271
[insHom] => 333292
[delHom] => 463144
[insHet] => 445653
[delHet] => 555268
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21375577
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375577/IW_32557-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242