Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190242
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 203
                    [wgsID] => 213
                    [fwdFile] => IW_32559_R1.fastq.gz
                    [fwdMd5] => 16a809849e819e25182125405257f336
                    [revFile] => IW_32559_R2.fastq.gz
                    [revMd5] => 4dbd19a71efee153c61ce28db492da00
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679359
                    [enaRun] => ERR11271789
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 358
                    [wgsID] => 213
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-20 17:30:00
                    [dateCompleted] => 2023-03-21 14:15:00
                    [bamMd5] => 46793e6675942e7923274f114ee2c6fe
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 983499865
                    [primaryReads] => 
                    [mappedReads] => 981682732
                    [primaryMapped] => 
                    [pairedReads] => 963883780
                    [meanInsertSize] => 465.57
                    [meanReadDepth] => 48.48
                    [variantsCalled] => 6104390
                    [variantsFiltered] => 5719363
                    [snpCount] => 3977946
                    [snpHom] => 2120705
                    [snpHet] => 1857241
                    [indelCount] => 1750845
                    [insHom] => 337147
                    [delHom] => 466704
                    [insHet] => 439871
                    [delHet] => 539482
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375579
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375579/IW_32559-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242