Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190244
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 205
                    [wgsID] => 217
                    [fwdFile] => IW_32563_R1.fastq.gz
                    [fwdMd5] => e55d44e07e910fbab74e476f8b6d46ba
                    [revFile] => IW_32563_R2.fastq.gz
                    [revMd5] => 6bd0efea6563411c052d083ae02126b6
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679363
                    [enaRun] => ERR11271793
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 362
                    [wgsID] => 217
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-20 17:31:00
                    [dateCompleted] => 2023-03-21 13:44:00
                    [bamMd5] => da4aac274c2a2b06888e7bd5e96bd7e6
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1022481250
                    [primaryReads] => 
                    [mappedReads] => 1020498126
                    [primaryMapped] => 
                    [pairedReads] => 1000491248
                    [meanInsertSize] => 465.79
                    [meanReadDepth] => 47.03
                    [variantsCalled] => 5940884
                    [variantsFiltered] => 5555549
                    [snpCount] => 3864846
                    [snpHom] => 2196277
                    [snpHet] => 1668569
                    [indelCount] => 1699247
                    [insHom] => 351242
                    [delHom] => 483960
                    [insHet] => 399402
                    [delHet] => 491879
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375583
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375583/IW_32563-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242