Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190245
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 206
[wgsID] => 219
[fwdFile] => IW_32565_R1.fastq.gz
[fwdMd5] => b3311d9aa4689bc57de11dde18ac8220
[revFile] => IW_32565_R2.fastq.gz
[revMd5] => ac0a9f1e546279e3f3512473a31205a7
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679365
[enaRun] => ERR11271795
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 364
[wgsID] => 219
[refGenome] => cf4
[dateSubmitted] => 2023-03-20 17:32:00
[dateCompleted] => 2023-03-21 14:01:00
[bamMd5] => a57ae59a8923a5de5db4375b7a18cf74
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1020248061
[primaryReads] =>
[mappedReads] => 1018410180
[primaryMapped] =>
[pairedReads] => 999472412
[meanInsertSize] => 456.60
[meanReadDepth] => 47.11
[variantsCalled] => 6158565
[variantsFiltered] => 5790556
[snpCount] => 4029681
[snpHom] => 2032409
[snpHet] => 1997272
[indelCount] => 1770682
[insHom] => 318232
[delHom] => 441660
[insHet] => 467604
[delHet] => 577269
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21375585
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375585/IW_32565-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242