Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269033
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 696
[wgsID] => 430
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1558925436
[FastqRCS] => 0
[enaExperiment] => SRX7136387
[enaRun] => SRR10441634
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1537
[wgsID] => 430
[refGenome] => cf4
[dateSubmitted] => 2024-02-21 09:28:12
[dateCompleted] => 2024-02-22 11:36:39
[bamMd5] => 6f1904d4b7343286d3e49484dc68bd2c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 828154213
[primaryReads] => 771952256
[mappedReads] => 824578101
[primaryMapped] => 768376144
[pairedReads] => 705814076
[meanInsertSize] => 347.25
[meanReadDepth] => 33.91
[variantsCalled] => 6150765
[variantsFiltered] => 5757736
[snpCount] => 3955720
[snpHom] =>
[snpHet] =>
[indelCount] => 1811378
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
