Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190162
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 208
                    [wgsID] => 231
                    [fwdFile] => JA_32552_R1.fastq.gz
                    [fwdMd5] => 55ca258249af614633d255ace5465015
                    [revFile] => JA_32552_R2.fastq.gz
                    [revMd5] => 0c35c137d02661690cb875dbc03d9953
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679334
                    [enaRun] => ERR11271764
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 220
                    [wgsID] => 231
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-20 12:28:00
                    [dateCompleted] => 2022-10-21 20:40:00
                    [bamMd5] => 7ec5906a053c135656a2b26126c8f2d1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1016857588
                    [primaryReads] => 
                    [mappedReads] => 993497269
                    [primaryMapped] => 
                    [pairedReads] => 972278700
                    [meanInsertSize] => 432.80
                    [meanReadDepth] => 32.10
                    [variantsCalled] => 7145694
                    [variantsFiltered] => 6801049
                    [snpCount] => 4834407
                    [snpHom] => 2442644
                    [snpHet] => 2391763
                    [indelCount] => 1978071
                    [insHom] => 391363
                    [delHom] => 515989
                    [insHet] => 505842
                    [delHet] => 601494
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517646
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517646/JA_32552-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242