Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190162
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 208
[wgsID] => 231
[fwdFile] => JA_32552_R1.fastq.gz
[fwdMd5] => 55ca258249af614633d255ace5465015
[revFile] => JA_32552_R2.fastq.gz
[revMd5] => 0c35c137d02661690cb875dbc03d9953
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679334
[enaRun] => ERR11271764
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 220
[wgsID] => 231
[refGenome] => cf4
[dateSubmitted] => 2022-10-20 12:28:00
[dateCompleted] => 2022-10-21 20:40:00
[bamMd5] => 7ec5906a053c135656a2b26126c8f2d1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1016857588
[primaryReads] =>
[mappedReads] => 993497269
[primaryMapped] =>
[pairedReads] => 972278700
[meanInsertSize] => 432.80
[meanReadDepth] => 32.10
[variantsCalled] => 7145694
[variantsFiltered] => 6801049
[snpCount] => 4834407
[snpHom] => 2442644
[snpHet] => 2391763
[indelCount] => 1978071
[insHom] => 391363
[delHom] => 515989
[insHet] => 505842
[delHet] => 601494
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21517646
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517646/JA_32552-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242