Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190096
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 209
[wgsID] => 296
[fwdFile] => KE_24827_R1.fastq.gz
[fwdMd5] => 7561fc9e6918dc367438694ce83c618c
[revFile] => KE_24827_R2.fastq.gz
[revMd5] => 052a82123b6950d190351b106706c0d9
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664693
[enaRun] => ERR11256484
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 56
[wgsID] => 296
[refGenome] => cf4
[dateSubmitted] => 2022-01-10 11:55:00
[dateCompleted] => 2022-01-11 13:02:00
[bamMd5] => 5ed7d2e4e7aec075a19c27bc95948975
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 954994401
[primaryReads] =>
[mappedReads] => 847229388
[primaryMapped] =>
[pairedReads] => 827742236
[meanInsertSize] => 442.16
[meanReadDepth] => 40.12
[variantsCalled] => 6501935
[variantsFiltered] => 6154017
[snpCount] => 4298341
[snpHom] => 1790822
[snpHet] => 2507519
[indelCount] => 1867202
[insHom] => 280680
[delHom] => 395755
[insHet] => 554619
[delHet] => 678942
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21778101
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778101/KE_24827-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242