Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190097
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 210
                    [wgsID] => 308
                    [fwdFile] => KE_34445_R1.fastq.gz
                    [fwdMd5] => 426aaf3282fa171ffa123a7688e8358e
                    [revFile] => KE_34445_R2.fastq.gz
                    [revMd5] => 191eb8c3c578298015f4d3c1303d1d49
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664705
                    [enaRun] => ERR11256496
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 57
                    [wgsID] => 308
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-01-07 17:30:00
                    [dateCompleted] => 2022-01-08 10:53:00
                    [bamMd5] => 35d5773ad665f9ae896f13403c055337
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 991508926
                    [primaryReads] => 
                    [mappedReads] => 985605893
                    [primaryMapped] => 
                    [pairedReads] => 962035942
                    [meanInsertSize] => 529.20
                    [meanReadDepth] => 47.55
                    [variantsCalled] => 6479310
                    [variantsFiltered] => 6077424
                    [snpCount] => 4248708
                    [snpHom] => 1847066
                    [snpHet] => 2401642
                    [indelCount] => 1840024
                    [insHom] => 288685
                    [delHom] => 405626
                    [insHet] => 535443
                    [delHet] => 651535
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778102
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778102/KE_34445-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242