Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA6106878
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 212
[wgsID] => 225
[fwdFile] => LA_20217_R1.fastq.gz
[fwdMd5] => 76bdc529b844b47eeb07f7e763e38ef9
[revFile] => LA_20217_R2.fastq.gz
[revMd5] => 4c1d26cdbb95e732c15cd6d200cfec8d
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3605173
[enaRun] => ERR3609666
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 256
[wgsID] => 225
[refGenome] => cf4
[dateSubmitted] => 2022-11-23 08:46:00
[dateCompleted] => 2022-11-24 04:19:00
[bamMd5] => c93920714bf6fb29a2db69a18dfd0acd
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 967110239
[primaryReads] =>
[mappedReads] => 949246176
[primaryMapped] =>
[pairedReads] => 928568252
[meanInsertSize] => 416.27
[meanReadDepth] => 43.34
[variantsCalled] => 6781371
[variantsFiltered] => 6425495
[snpCount] => 4536515
[snpHom] => 2018154
[snpHet] => 2518361
[indelCount] => 1900735
[insHom] => 319323
[delHom] => 432412
[insHet] => 537422
[delHet] => 652577
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21517647
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517647/LA_20217-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242