Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA6106878
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 212
                    [wgsID] => 225
                    [fwdFile] => LA_20217_R1.fastq.gz
                    [fwdMd5] => 76bdc529b844b47eeb07f7e763e38ef9
                    [revFile] => LA_20217_R2.fastq.gz
                    [revMd5] => 4c1d26cdbb95e732c15cd6d200cfec8d
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX3605173
                    [enaRun] => ERR3609666
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 256
                    [wgsID] => 225
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-23 08:46:00
                    [dateCompleted] => 2022-11-24 04:19:00
                    [bamMd5] => c93920714bf6fb29a2db69a18dfd0acd
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 967110239
                    [primaryReads] => 
                    [mappedReads] => 949246176
                    [primaryMapped] => 
                    [pairedReads] => 928568252
                    [meanInsertSize] => 416.27
                    [meanReadDepth] => 43.34
                    [variantsCalled] => 6781371
                    [variantsFiltered] => 6425495
                    [snpCount] => 4536515
                    [snpHom] => 2018154
                    [snpHet] => 2518361
                    [indelCount] => 1900735
                    [insHom] => 319323
                    [delHom] => 432412
                    [insHet] => 537422
                    [delHet] => 652577
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517647
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517647/LA_20217-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242