Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190246
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 214
                    [wgsID] => 215
                    [fwdFile] => LE_32561_R1.fastq.gz
                    [fwdMd5] => aa7e2d5205beab55550a959f58971a70
                    [revFile] => LE_32561_R2.fastq.gz
                    [revMd5] => f81beaad4e6b6c60fcfefc2604eddb80
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679361
                    [enaRun] => ERR11271791
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 249
                    [wgsID] => 215
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-22 07:58:00
                    [dateCompleted] => 2022-11-23 02:41:00
                    [bamMd5] => 1df0f248354d61655ffbac10f81adbc4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 982915810
                    [primaryReads] => 
                    [mappedReads] => 980766437
                    [primaryMapped] => 
                    [pairedReads] => 962664592
                    [meanInsertSize] => 480.24
                    [meanReadDepth] => 48.30
                    [variantsCalled] => 6242288
                    [variantsFiltered] => 5865993
                    [snpCount] => 4083638
                    [snpHom] => 1900640
                    [snpHet] => 2182998
                    [indelCount] => 1792831
                    [insHom] => 301946
                    [delHom] => 421890
                    [insHet] => 497776
                    [delHet] => 608245
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375581
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375581/LE_32561-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242