Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA5577245
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 215
                    [wgsID] => 248
                    [fwdFile] => LH_30102_R1.fastq.gz
                    [fwdMd5] => 02ad170443bdf75f075e3993da3dbca3
                    [revFile] => LH_30102_R2.fastq.gz
                    [revMd5] => a3c42b530a4e5c8ea1d2228ea9ed1d8f
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX3319596
                    [enaRun] => ERR3293249
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 393
                    [wgsID] => 248
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-28 15:37:00
                    [dateCompleted] => 2023-03-29 10:33:00
                    [bamMd5] => b6dfbed0a61ca7835f297af20354f9eb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 769243452
                    [primaryReads] => 
                    [mappedReads] => 766147646
                    [primaryMapped] => 
                    [pairedReads] => 749269860
                    [meanInsertSize] => 484.92
                    [meanReadDepth] => 36.57
                    [variantsCalled] => 6569599
                    [variantsFiltered] => 6250525
                    [snpCount] => 4404053
                    [snpHom] => 1725201
                    [snpHet] => 2678852
                    [indelCount] => 1857707
                    [insHom] => 275291
                    [delHom] => 384706
                    [insHet] => 556089
                    [delHet] => 682356
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782179
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782179/LH_30102-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242