Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA5577245
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 215
[wgsID] => 248
[fwdFile] => LH_30102_R1.fastq.gz
[fwdMd5] => 02ad170443bdf75f075e3993da3dbca3
[revFile] => LH_30102_R2.fastq.gz
[revMd5] => a3c42b530a4e5c8ea1d2228ea9ed1d8f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3319596
[enaRun] => ERR3293249
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 393
[wgsID] => 248
[refGenome] => cf4
[dateSubmitted] => 2023-03-28 15:37:00
[dateCompleted] => 2023-03-29 10:33:00
[bamMd5] => b6dfbed0a61ca7835f297af20354f9eb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 769243452
[primaryReads] =>
[mappedReads] => 766147646
[primaryMapped] =>
[pairedReads] => 749269860
[meanInsertSize] => 484.92
[meanReadDepth] => 36.57
[variantsCalled] => 6569599
[variantsFiltered] => 6250525
[snpCount] => 4404053
[snpHom] => 1725201
[snpHet] => 2678852
[indelCount] => 1857707
[insHom] => 275291
[delHom] => 384706
[insHet] => 556089
[delHet] => 682356
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21782179
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782179/LH_30102-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242