Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA5577246
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 216
                    [wgsID] => 273
                    [fwdFile] => LH_33722_R1.fastq.gz
                    [fwdMd5] => 0b057f9015c0e959586085cfe179ffb7
                    [revFile] => LH_33722_R2.fastq.gz
                    [revMd5] => 3a382f9ba623e319e45e29ac8e3bf419
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX3319597
                    [enaRun] => ERR3293250
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 411
                    [wgsID] => 273
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-30 09:41:00
                    [dateCompleted] => 2023-03-31 04:12:00
                    [bamMd5] => c4528115c21819923780e6f55ca0d1d0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 861882127
                    [primaryReads] => 
                    [mappedReads] => 858306014
                    [primaryMapped] => 
                    [pairedReads] => 839430744
                    [meanInsertSize] => 483.71
                    [meanReadDepth] => 41.59
                    [variantsCalled] => 6486776
                    [variantsFiltered] => 6088215
                    [snpCount] => 4257542
                    [snpHom] => 1838815
                    [snpHet] => 2418727
                    [indelCount] => 1841725
                    [insHom] => 293167
                    [delHom] => 408145
                    [insHet] => 535202
                    [delHet] => 647164
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780966
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780966/LH_33722-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242