Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA5577246
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 216
[wgsID] => 273
[fwdFile] => LH_33722_R1.fastq.gz
[fwdMd5] => 0b057f9015c0e959586085cfe179ffb7
[revFile] => LH_33722_R2.fastq.gz
[revMd5] => 3a382f9ba623e319e45e29ac8e3bf419
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX3319597
[enaRun] => ERR3293250
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 411
[wgsID] => 273
[refGenome] => cf4
[dateSubmitted] => 2023-03-30 09:41:00
[dateCompleted] => 2023-03-31 04:12:00
[bamMd5] => c4528115c21819923780e6f55ca0d1d0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 861882127
[primaryReads] =>
[mappedReads] => 858306014
[primaryMapped] =>
[pairedReads] => 839430744
[meanInsertSize] => 483.71
[meanReadDepth] => 41.59
[variantsCalled] => 6486776
[variantsFiltered] => 6088215
[snpCount] => 4257542
[snpHom] => 1838815
[snpHet] => 2418727
[indelCount] => 1841725
[insHom] => 293167
[delHom] => 408145
[insHet] => 535202
[delHet] => 647164
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21780966
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780966/LH_33722-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242