Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190247
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 217
[wgsID] => 194
[fwdFile] => LMU_13284_R1.fastq.gz
[fwdMd5] => cada3b5f7e662cf764a7b90b42b2dd3c
[revFile] => LMU_13284_R2.fastq.gz
[revMd5] => 06a61a12db23b84edccfb168f2b164f7
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10682114
[enaRun] => ERR11274544
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 339
[wgsID] => 194
[refGenome] => cf4
[dateSubmitted] => 2023-03-21 15:05:00
[dateCompleted] => 2023-03-22 12:11:00
[bamMd5] => 0a704e72cfc057022a90f2d08bd8f02d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 980123087
[primaryReads] =>
[mappedReads] => 977931361
[primaryMapped] =>
[pairedReads] => 957710832
[meanInsertSize] => 497.55
[meanReadDepth] => 46.39
[variantsCalled] => 6554251
[variantsFiltered] => 6154947
[snpCount] => 4298031
[snpHom] => 1828631
[snpHet] => 2469400
[indelCount] => 1868415
[insHom] => 284206
[delHom] => 399017
[insHet] => 549876
[delHet] => 677075
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21375561
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375561/LMU_13284-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242