Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189988
                    [wgsExptID] => 21
                    [Batch] => Edinburgh_11
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 5
                    [DateSubmitted] => 2018-11-13
                    [FastqID] => 219
                    [wgsID] => 35
                    [fwdFile] => LR_25242_R1.fastq.gz
                    [fwdMd5] => 6a5caca935addae3a5e21baf2ecdacad
                    [revFile] => LR_25242_R2.fastq.gz
                    [revMd5] => 6f1e87039050f957dd36a11c97bc07b4
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10641004
                    [enaRun] => ERR11213956
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 83
                    [wgsID] => 35
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-08 09:33:00
                    [dateCompleted] => 2022-10-09 01:49:00
                    [bamMd5] => 5e69588fb71196c945cccf499dce9e63
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 838230991
                    [primaryReads] => 
                    [mappedReads] => 815904185
                    [primaryMapped] => 
                    [pairedReads] => 786531084
                    [meanInsertSize] => 440.51
                    [meanReadDepth] => 38.70
                    [variantsCalled] => 6326768
                    [variantsFiltered] => 5960128
                    [snpCount] => 4143081
                    [snpHom] => 1922196
                    [snpHet] => 2220885
                    [indelCount] => 1827682
                    [insHom] => 304874
                    [delHom] => 426333
                    [insHet] => 507391
                    [delHet] => 626660
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736964
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736964/LR_25242-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242