Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189990
[wgsExptID] => 21
[Batch] => Edinburgh_11
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 5
[DateSubmitted] => 2018-11-13
[FastqID] => 221
[wgsID] => 37
[fwdFile] => LR_30639_R1.fastq.gz
[fwdMd5] => 9c779ce23aaf39140cb516445c220da6
[revFile] => LR_30639_R2.fastq.gz
[revMd5] => 6d130c3b61ccec93acd49993bcb6d304
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10641006
[enaRun] => ERR11213958
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 85
[wgsID] => 37
[refGenome] => cf4
[dateSubmitted] => 2022-10-08 09:34:00
[dateCompleted] => 2022-10-09 02:19:00
[bamMd5] => 11f7f5c29f597137ee5489952f74fb4f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 872099339
[primaryReads] =>
[mappedReads] => 857426174
[primaryMapped] =>
[pairedReads] => 831509510
[meanInsertSize] => 463.68
[meanReadDepth] => 44.53
[variantsCalled] => 6339750
[variantsFiltered] => 5969188
[snpCount] => 4157038
[snpHom] => 1955945
[snpHet] => 2201093
[indelCount] => 1823041
[insHom] => 308367
[delHom] => 428956
[insHet] => 505509
[delHet] => 618307
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21736966
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736966/LR_30639-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242