Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189990
                    [wgsExptID] => 21
                    [Batch] => Edinburgh_11
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 5
                    [DateSubmitted] => 2018-11-13
                    [FastqID] => 221
                    [wgsID] => 37
                    [fwdFile] => LR_30639_R1.fastq.gz
                    [fwdMd5] => 9c779ce23aaf39140cb516445c220da6
                    [revFile] => LR_30639_R2.fastq.gz
                    [revMd5] => 6d130c3b61ccec93acd49993bcb6d304
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10641006
                    [enaRun] => ERR11213958
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 85
                    [wgsID] => 37
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-08 09:34:00
                    [dateCompleted] => 2022-10-09 02:19:00
                    [bamMd5] => 11f7f5c29f597137ee5489952f74fb4f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 872099339
                    [primaryReads] => 
                    [mappedReads] => 857426174
                    [primaryMapped] => 
                    [pairedReads] => 831509510
                    [meanInsertSize] => 463.68
                    [meanReadDepth] => 44.53
                    [variantsCalled] => 6339750
                    [variantsFiltered] => 5969188
                    [snpCount] => 4157038
                    [snpHom] => 1955945
                    [snpHet] => 2201093
                    [indelCount] => 1823041
                    [insHom] => 308367
                    [delHom] => 428956
                    [insHet] => 505509
                    [delHet] => 618307
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21736966
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736966/LR_30639-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242