Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296819
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 627
[wgsID] => 4
[fwdFile] => LR_34843_R1.fastq.gz
[fwdMd5] => 002054eb8a39b67dae5e08f81f0a1d2b
[revFile] => LR_34843_R2.fastq.gz
[revMd5] => 2d2159410e6d9c7d05d596a4f0de595b
[rawReads] => 1026051162
[FastqRCS] => 1
[enaExperiment] => ERX10830372
[enaRun] => ERR11423064
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 40
[wgsID] => 4
[refGenome] => cf4
[dateSubmitted] => 2023-07-07 10:57:00
[dateCompleted] => 2023-07-08 04:53:00
[bamMd5] => fce37962b98d4c5bbf80df74e59f3538
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 550201460
[primaryReads] =>
[mappedReads] => 548924010
[primaryMapped] =>
[pairedReads] => 533790060
[meanInsertSize] => 341.19
[meanReadDepth] => 25.67
[variantsCalled] => 6341858
[variantsFiltered] => 6013003
[snpCount] => 4220444
[snpHom] => 1850965
[snpHet] => 2369479
[indelCount] => 1802410
[insHom] => 300859
[delHom] => 425597
[insHet] => 497084
[delHet] => 615681
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21659496
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659496/LR_34843-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242