Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296819
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 627
                    [wgsID] => 4
                    [fwdFile] => LR_34843_R1.fastq.gz
                    [fwdMd5] => 002054eb8a39b67dae5e08f81f0a1d2b
                    [revFile] => LR_34843_R2.fastq.gz
                    [revMd5] => 2d2159410e6d9c7d05d596a4f0de595b
                    [rawReads] => 1026051162
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830372
                    [enaRun] => ERR11423064
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 40
                    [wgsID] => 4
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-07 10:57:00
                    [dateCompleted] => 2023-07-08 04:53:00
                    [bamMd5] => fce37962b98d4c5bbf80df74e59f3538
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 550201460
                    [primaryReads] => 
                    [mappedReads] => 548924010
                    [primaryMapped] => 
                    [pairedReads] => 533790060
                    [meanInsertSize] => 341.19
                    [meanReadDepth] => 25.67
                    [variantsCalled] => 6341858
                    [variantsFiltered] => 6013003
                    [snpCount] => 4220444
                    [snpHom] => 1850965
                    [snpHet] => 2369479
                    [indelCount] => 1802410
                    [insHom] => 300859
                    [delHom] => 425597
                    [insHet] => 497084
                    [delHet] => 615681
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659496
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659496/LR_34843-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242