Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721100
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 594
[wgsID] => 352
[fwdFile] => LR_37842_R1.fastq.gz
[fwdMd5] => 26a310dd939fe6c7091b1def969515c7
[revFile] => LR_37842_R2.fastq.gz
[revMd5] => 5f9d89112ce62650c7644987256e212b
[rawReads] => 742588966
[FastqRCS] => 1
[enaExperiment] => ERX10632433
[enaRun] => ERR11203049
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 813
[wgsID] => 352
[refGenome] => cf4
[dateSubmitted] => 2023-06-19 12:39:00
[dateCompleted] => 2023-06-20 01:39:00
[bamMd5] => 6629228c12c45924abbd8f79f10e3138
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 623098138
[primaryReads] =>
[mappedReads] => 622310533
[primaryMapped] =>
[pairedReads] => 604286258
[meanInsertSize] => 319.47
[meanReadDepth] => 29.06
[variantsCalled] => 6308981
[variantsFiltered] => 6006696
[snpCount] => 4205533
[snpHom] => 1842084
[snpHet] => 2363449
[indelCount] => 1811002
[insHom] => 301261
[delHom] => 423552
[insHet] => 504083
[delHet] => 619763
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817128
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817128/LR_37842-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242