Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA114648000
                    [wgsExptID] => 27
                    [Batch] => CRUKCI_5
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 2
                    [DateSubmitted] => 2023-10-10
                    [FastqID] => 653
                    [wgsID] => 414
                    [fwdFile] => LR_39119_R1.fastq.gz
                    [fwdMd5] => d42860b1f808f3bc638808569b672cdd
                    [revFile] => LR_39119_R2.fastq.gz
                    [revMd5] => ce2319ee8787b47d66b27d60f323dc5b
                    [rawReads] => 456787940
                    [FastqRCS] => 1
                    [enaExperiment] => ERX11756791
                    [enaRun] => ERR12380219
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1511
                    [wgsID] => 414
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-12-19 11:50:32
                    [dateCompleted] => 2023-12-20 00:41:35
                    [bamMd5] => 0a316a22a970d8b792635bc015f19582
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 448189292
                    [primaryReads] => 444837250
                    [mappedReads] => 445391683
                    [primaryMapped] => 442039641
                    [pairedReads] => 434639486
                    [meanInsertSize] => 463.11
                    [meanReadDepth] => 20.75
                    [variantsCalled] => 6160436
                    [variantsFiltered] => 5887710
                    [snpCount] => 4130604
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1765822
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ22157308
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ221/ERZ22157308/LR_39119-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242